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REFERENCES
"Direct
evaluation of thermal fluctuations in proteins using a single parameter
harmonic potential," I. Bahar, A. R. Atilgan, and B. Erman, Folding
& Design, 2, 173-181, (1997)
"Gaussian dynamics of folded proteins," Haliloglu, T. Bahar, I.,
and Erman, B., Phys. Rev. Lett., 79, 3090-3093, (1997)
"Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast
Motions in Relation to Function and Stability," Bahar, I., Atilgan, A.
R., Demirel, M. C. and Erman B., Phys. Rev. Lett., 80 (1998)
"Correlation between native state hydrogen exchange and cooperative
residue fluctuations from a simple model" I. Bahar, A. Wallqvist, D. G.
Covell, & R.L. Jernigan, Biochemistry 37, 1067-1075, (1998)
"Identification of Kinetically Hot Residues in Proteins," Demirel,
M. C., Atilgan, A. R., Jernigan, R. L., Erman, B. and Bahar I., submitted to
Protein Science, (1998)
"Vibrational dynamics of transfer RNAs. Comparison of
the free and enzyme-bound forms." I. Bahar & R. L.
Jernigan, J. Mol. Biol. 281, 871-884 (1998)
"Collective dynamics of
HIV-1 reverse transcriptase "I. Bahar, B. Erman, R. L.
Jernigan, A. R. Atilgan, & D. Covell J. Mol. Biol. 285, 1023-1037, (1999)
" Cooperative fluctuations and subunit communication in tryptophan
synthase" I. Bahar & R.L. Jernigan Biochemistry 38, 3478-3490,
(1999) Full
paper(Acrobat)
"Relating structure to function through the dominant modes of motion of
DNA topoisomerase II" R.L. Jernigan, M. C. Demirel & I. Bahar Int.J.
Quantum Chem. 75, 301-312, 1999.
"Structure-based analysis of protein dynamics. Comparison of theoretical
results for hen lysozyme with X-ray diffraction and NMR relaxation data"
T. Haliloglu & I. Bahar, Proteins: Structure, Function, & Genetics
37, 654-667, 1999.
"Dynamics of proteins and biomolecular complexes. Inferring functional
motions from structure" I. Bahar, Reviews in Chemical Engineering, 15,
319-349, 1999.
"Proteins with similar architecture exhibit common large-scale dynamic
behavior. Specificity resides in local differences" O. Keskin, R. L.
Jernigan & I. Bahar, Biophysical Journal, 78, 2093-2106, 2000. Full
paper(Acrobat)
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